STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opa3Outer mitochondrial membrane lipid metabolism regulator OPA3. (156 aa)    
Predicted Functional Partners:
LOC115568214
Transmembrane protein 126A-like.
      
 0.538
PNPT1
Polyribonucleotide nucleotidyltransferase 1.
      
 0.469
gpn2
GPN-loop GTPase 2.
   
    0.459
LOC115586301
AFG3-like protein 1.
   
 
 0.402
LOC115580173
AFG3-like protein 1.
   
 
 0.402
afg3l2
AFG3 like matrix AAA peptidase subunit 2.
   
 
 0.402
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.