LOC115565903 protein (Sparus aurata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC115565903

B(0,+)-type amino acid transporter 1-like. (492 aa)

Predicted Functional Partners:

slc3a1

0.931

ENSSAUP00010004816

0.826

LOC115594100

0.826

slc3a2

0.826

LOC115568472

0.749

ENSSAUP00010048097

0.707

kiaa0513

0.707

alkbh3

0.707

ENSSAUP00010006557

0.686

nudt12

0.620

Your Current Organism:

Sparus aurata

NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSAUP00010004816	LOC115565903	ENSSAUP00010004816	ENSSAUP00010052173	annotation not available	B(0,+)-type amino acid transporter 1-like.	0.826
ENSSAUP00010006557	LOC115565903	ENSSAUP00010006557	ENSSAUP00010052173	annotation not available	B(0,+)-type amino acid transporter 1-like.	0.686
ENSSAUP00010048097	LOC115565903	ENSSAUP00010048097	ENSSAUP00010052173	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.	B(0,+)-type amino acid transporter 1-like.	0.707
LOC115565903	ENSSAUP00010004816	ENSSAUP00010052173	ENSSAUP00010004816	B(0,+)-type amino acid transporter 1-like.	annotation not available	0.826
LOC115565903	ENSSAUP00010006557	ENSSAUP00010052173	ENSSAUP00010006557	B(0,+)-type amino acid transporter 1-like.	annotation not available	0.686
LOC115565903	ENSSAUP00010048097	ENSSAUP00010052173	ENSSAUP00010048097	B(0,+)-type amino acid transporter 1-like.	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.	0.707
LOC115565903	LOC115568472	ENSSAUP00010052173	ENSSAUP00010035521	B(0,+)-type amino acid transporter 1-like.	Uncharacterized LOC115568472.	0.749
LOC115565903	LOC115594100	ENSSAUP00010052173	ENSSAUP00010032795	B(0,+)-type amino acid transporter 1-like.	4F2 cell-surface antigen heavy chain-like.	0.826
LOC115565903	alkbh3	ENSSAUP00010052173	ENSSAUP00010055666	B(0,+)-type amino acid transporter 1-like.	alkB homolog 3, alpha-ketoglutaratedependent dioxygenase.	0.707
LOC115565903	kiaa0513	ENSSAUP00010052173	ENSSAUP00010053746	B(0,+)-type amino acid transporter 1-like.	KIAA0513 ortholog.	0.707
LOC115565903	nudt12	ENSSAUP00010052173	ENSSAUP00010044350	B(0,+)-type amino acid transporter 1-like.	Nudix hydrolase 12.	0.620
LOC115565903	slc3a1	ENSSAUP00010052173	ENSSAUP00010055831	B(0,+)-type amino acid transporter 1-like.	Solute carrier family 3 member 1.	0.931
LOC115565903	slc3a2	ENSSAUP00010052173	ENSSAUP00010068079	B(0,+)-type amino acid transporter 1-like.	Solute carrier family 3 member 2.	0.826
LOC115568472	LOC115565903	ENSSAUP00010035521	ENSSAUP00010052173	Uncharacterized LOC115568472.	B(0,+)-type amino acid transporter 1-like.	0.749
LOC115594100	LOC115565903	ENSSAUP00010032795	ENSSAUP00010052173	4F2 cell-surface antigen heavy chain-like.	B(0,+)-type amino acid transporter 1-like.	0.826
alkbh3	LOC115565903	ENSSAUP00010055666	ENSSAUP00010052173	alkB homolog 3, alpha-ketoglutaratedependent dioxygenase.	B(0,+)-type amino acid transporter 1-like.	0.707
kiaa0513	LOC115565903	ENSSAUP00010053746	ENSSAUP00010052173	KIAA0513 ortholog.	B(0,+)-type amino acid transporter 1-like.	0.707
nudt12	LOC115565903	ENSSAUP00010044350	ENSSAUP00010052173	Nudix hydrolase 12.	B(0,+)-type amino acid transporter 1-like.	0.620
slc3a1	LOC115565903	ENSSAUP00010055831	ENSSAUP00010052173	Solute carrier family 3 member 1.	B(0,+)-type amino acid transporter 1-like.	0.931
slc3a2	LOC115565903	ENSSAUP00010068079	ENSSAUP00010052173	Solute carrier family 3 member 2.	B(0,+)-type amino acid transporter 1-like.	0.826