STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115575105Procollagen galactosyltransferase 1-like. (668 aa)    
Predicted Functional Partners:
LOC115589962
Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3-like.
   
0.872
plod2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
0.872
plod1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
0.872
LOC115592074
Procollagen galactosyltransferase 2-like.
  
  
 
0.833
LOC115589944
Procollagen galactosyltransferase 1-like.
  
  
 
0.790
LOC115593219
Procollagen galactosyltransferase 2-like.
  
  
 
0.699
ogfod2
2-oxoglutarate and iron dependent oxygenase domain containing 2.
   
 0.653
ENSSAUP00010036764
annotation not available
    
 0.644
col6a2
Collagen type VI alpha 2 chain.
   
 0.623
ENSSAUP00010069114
annotation not available
   
 0.623
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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