STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115587307Carboxylesterase 5A-like. (618 aa)    
Predicted Functional Partners:
LOC115567700
Cytochrome b5 reductase 4.
    
 0.798
ENSSAUP00010062949
UTP20 small subunit processome component.
   
 0.701
CASK
Calcium/calmodulin dependent serine protein kinase.
   
 0.674
ENSSAUP00010067569
Calcium/calmodulin-dependent serine protein kinase b.
   
 0.674
LOC115589188
Neurexin-2-like.
    
 0.668
LOC115593678
Neurexin-1-beta-like.
    
 0.668
LOC115573720
Neurexin-3b.
    
 0.668
LOC115597690
Neurexin-3a.
    
 0.668
nrxn1
Neurexin 1.
    
 0.668
LOC115571195
Neurexin-1a-like.
    
 0.668
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.