STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sec23ipSEC23 interacting protein. (971 aa)    
Predicted Functional Partners:
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.789
sec31a
SEC31 homolog A, COPII coat complex component.
    
 0.768
LOC115571196
Protein transport protein Sec31A-like.
    
 0.768
ENSSAUP00010006684
SEC23 homolog B, coat complex II component.
   
 0.732
LOC115565857
Protein transport protein Sec23A.
   
 0.732
ankrd40
Ankyrin repeat domain 40.
    
 0.715
sec24d
SEC24 homolog D, COPII coat complex component.
   
 
 0.700
ENSSAUP00010024853
annotation not available
   
 0.677
LOC115570700
Circularly permutated Ras protein 1-like.
   
 0.677
ENSSAUP00010018692
Selenoprotein I.
   
 
 0.658
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.