STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115588371Rhodopsin kinase GRK1-like. (578 aa)    
Predicted Functional Partners:
rcvrn
Recoverin.
   
 0.957
LOC115579018
Recoverin-like.
   
 0.937
ENSSAUP00010058170
Recoverin 2.
   
 0.937
RHO
Rhodopsin.
   
 0.926
ENSSAUP00010043612
Rhodopsin.
   
 0.926
LOC115583901
Green-sensitive opsin.
   
 0.917
ENSSAUP00010048319
annotation not available
   
 0.917
ENSSAUP00010032136
Chemokine (C-X-C motif) receptor 2.
    
 0.892
LOC115588102
C-X-C chemokine receptor type 2-like.
    
 0.892
LOC115576813
C-X-C chemokine receptor type 2-like.
    
 0.892
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.