STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spty2d1SPT2 chromatin protein domain containing 1. (757 aa)    
Predicted Functional Partners:
stx5
Syntaxin 5.
    
 0.789
uso1
USO1 vesicle transport factor.
   
 0.765
golga2
Golgin A2.
   
 
 0.726
ENSSAUP00010056216
Tubulin, gamma 1.
    
 0.708
ift20
Intraflagellar transport 20.
   
 0.704
GOSR1
Golgi SNAP receptor complex member 1-like.
   
 0.702
gosr1
Golgi SNAP receptor complex member 1.
   
 0.702
ENSSAUP00010045165
Cytoskeleton associated protein 5.
   
 0.693
LOC115586822
Ubiquitin-conjugating enzyme E2 variant 3-like.
  
 
 0.689
tubgcp3
Tubulin gamma complex associated protein 3.
    
 
 0.682
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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