STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr43WD repeat domain 43. (658 aa)    
Predicted Functional Partners:
mphosph10
M-phase phosphoprotein 10.
   
 0.999
nop56
NOP56 ribonucleoprotein.
   
 0.999
ENSSAUP00010010856
UTP6 small subunit processome component.
   
 0.999
wdr3
WD repeat domain 3.
   
0.999
ENSSAUP00010019513
BMS1 ribosome biogenesis factor.
   
 0.999
wdr75
WD repeat domain 75.
   
 0.999
wdr46
WD repeat domain 46.
   
 0.999
nop14
NOP14 nucleolar protein.
   
 0.999
ENSSAUP00010030525
WD repeat domain 36.
   
 0.999
utp18
UTP18 small subunit processome component.
   
 0.999
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.