STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shmt2Serine hydroxymethyltransferase 2. (517 aa)    
Predicted Functional Partners:
ENSSAUP00010053745
Phosphoribosylglycinamide formyltransferase.
  
 0.999
atic
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.
  
 0.985
ENSSAUP00010013762
Glycine dehydrogenase (decarboxylating).
 
 
 0.979
eprs1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.965
LOC115582377
Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial-like.
  
 0.963
ENSSAUP00010052982
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like.
  
 0.963
amt
Aminomethyltransferase.
  
 0.954
sardh
Sarcosine dehydrogenase.
  
 0.944
mthfd1l
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like.
  
 0.941
LOC115566338
C-1-tetrahydrofolate synthase, cytoplasmic-like.
  
 0.941
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.