STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp50Ubiquitin specific peptidase 50. (765 aa)    
Predicted Functional Partners:
ENSSAUP00010003923
Mitochondrial ribosomal protein L21.
   
 
 0.705
pcna
Proliferating cell nuclear antigen.
   
  0.692
mrps9
Mitochondrial ribosomal protein S9.
   
 
 0.684
mrps16
Mitochondrial ribosomal protein S16.
   
 
 0.680
mrpl3
Mitochondrial ribosomal protein L3.
   
 
 0.679
mrpl11
Mitochondrial ribosomal protein L11.
   
 
 0.677
ENSSAUP00010058064
Ribosomal protein S2.
    
 
 0.671
mrps14
Mitochondrial ribosomal protein S14.
    
 
 0.668
ENSSAUP00010032212
Ring finger protein 123.
   
 0.658
mrpl4
Mitochondrial ribosomal protein L4.
   
 
 0.656
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.