STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pald1Phosphatase domain containing paladin 1. (895 aa)    
Predicted Functional Partners:
parp2
poly(ADP-ribose) polymerase 2.
      
 0.530
polr2f
RNA polymerase II subunit F.
      
 0.504
LOC115571629
Syntaxin-4-like.
      
 0.504
ENSSAUP00010034138
Si:dkey-89b17.4.
      
 0.493
LOC115571185
Zinc finger protein 646-like.
      
 0.493
LOC115571011
A disintegrin and metalloproteinase with thrombospondin motifs 14-like.
      
 0.493
ENSSAUP00010049120
annotation not available
      
 0.459
parp1
poly(ADP-ribose) polymerase 1.
      
 0.457
chst2
Carbohydrate sulfotransferase 2.
      
 0.418
CHST8
Carbohydrate sulfotransferase 8-like.
      
 0.418
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.