STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PNPT1Polyribonucleotide nucleotidyltransferase 1. (770 aa)    
Predicted Functional Partners:
ENSSAUP00010023294
Ferredoxin-fold anticodon binding domain containing 1.
  
  
 0.936
tsfm
Ts translation elongation factor, mitochondrial.
  
  
 0.891
trnt1
tRNA nucleotidyl transferase 1.
  
 0.891
mtif2
Mitochondrial translational initiation factor 2.
  
  
 0.885
ENSSAUP00010010801
Eukaryotic translation initiation factor 5B.
  
  
 0.885
exosc10
Exosome component 10.
   
 
 0.873
mrpl20
Mitochondrial ribosomal protein L20.
  
  
 0.868
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
  
  
 0.861
rps9
Ribosomal protein S9.
  
  
 0.861
pdcd11
Programmed cell death 11.
  
  
 0.855
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.