STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115584869Voltage-gated potassium channel subunit beta-2-like. (458 aa)    
Predicted Functional Partners:
nup133
Nucleoporin 133.
   
 0.839
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.838
nup107
Nucleoporin 107.
   
 0.828
ncoa5
Nuclear receptor coactivator 5.
    
 0.787
nup98
Nucleoporin 98.
    
 0.787
LOC115587203
Nuclear receptor coactivator 5-like.
    
 0.787
nup85
Nucleoporin 85.
    
 0.785
LOC115567159
Nucleoporin SEH1.
    
 0.783
LOC115586297
Potassium voltage-gated channel subfamily A member 1-like.
   
 0.760
LOC115595780
Potassium voltage-gated channel subfamily A member 1-like.
   
 0.760
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.