STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpiaRibose 5-phosphate isomerase A. (287 aa)    
Predicted Functional Partners:
rpe
Ribulose-5-phosphate-3-epimerase.
  
 0.968
ENSSAUP00010004539
Transaldolase 1.
  
 0.965
rbm45
RNA binding motif protein 45.
  
 
 0.943
ENSSAUP00010062717
Transketolase a.
   
 0.938
rbks
Ribokinase.
    
 0.930
sord
Sorbitol dehydrogenase.
     
 0.924
ENSSAUP00010035444
Phosphoribosyl pyrophosphate synthetase 1B.
  
 
 0.922
LOC115577330
Ribose-phosphate pyrophosphokinase 2.
  
 
 0.922
LOC115585285
Transketolase-like protein 2.
   
 0.921
TKT
Transketolase.
   
 0.921
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.