STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115586905G/T mismatch-specific thymine DNA glycosylase-like. (460 aa)    
Predicted Functional Partners:
sumo1
Small ubiquitin like modifier 1.
   
 0.965
ENSSAUP00010053745
Phosphoribosylglycinamide formyltransferase.
  
 
  0.849
LOC115565983
Small ubiquitin-related modifier 3.
   
 0.841
LOC115586487
Small ubiquitin-related modifier 2.
   
 0.841
ENSSAUP00010048289
Small ubiquitin like modifier 2b.
   
 0.841
ENSSAUP00010067766
annotation not available
   
 0.841
ube2i
Ubiquitin conjugating enzyme E2 I.
   
 0.798
ENSSAUP00010032869
annotation not available
   
 0.797
ENSSAUP00010032876
Nuclear factor of activated T cells 2 interacting protein.
   
 0.797
LOC115575987
SUMO-conjugating enzyme UBC9-like.
   
 0.797
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.