STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115584851Sodium channel protein type 8 subunit alpha-like. (1967 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
   
 0.998
LOC115567419
Sodium channel subunit beta-1-like.
   
 0.902
scn1b
Sodium voltage-gated channel beta subunit 1.
   
 0.884
ENSSAUP00010052682
Sodium channel, voltage-gated, type II, beta.
   
 0.877
LOC115567377
Sodium channel subunit beta-4-like.
    
 0.869
ENSSAUP00010006693
WD repeat domain 35.
    
 0.828
IFT122
Intraflagellar transport 122.
   
 0.825
ift140
Intraflagellar transport 140.
    
 0.817
wdr19
WD repeat domain 19.
    
 0.815
calm1
Calmodulin 2.
    
 0.793
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.