STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115571753Formin-like protein 1. (1096 aa)    
Predicted Functional Partners:
LOC115583086
Cell division control protein 42 homolog.
   
 0.883
CDC42
Cell division control protein 42 homolog.
   
 0.883
nphp4
Nephrocystin 4.
    
 0.869
LOC115578553
Cell division control protein 42 homolog.
   
 0.807
LOC115568016
Cell division control protein 42 homolog.
   
 0.807
LOC115575004
Ras-related C3 botulinum toxin substrate 3-like.
   
 0.754
rac3
Rac family small GTPase 3.
   
 0.754
LOC115591868
Ras-related C3 botulinum toxin substrate 2.
   
 0.754
RAC1
Rac family small GTPase 1.
   
 0.754
LOC115574850
Ras-related C3 botulinum toxin substrate 1-like.
   
 0.754
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.