STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115582378Survival motor neuron protein 1-like. (283 aa)    
Predicted Functional Partners:
ddx20
DEAD-box helicase 20.
    
 0.994
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.988
gemin2
Gem nuclear organelle associated protein 2.
    
 0.987
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.986
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.978
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.973
ENSSAUP00010010617
Chloride channel, nucleotide-sensitive, 1A.
   
 0.971
ENSSAUP00010043211
Small nuclear ribonucleoprotein polypeptide F.
   
 0.969
gemin5
Gem nuclear organelle associated protein 5.
   
 0.955
ENSSAUP00010015138
Spermatogenesis associated 6-like.
    
 0.955
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.