STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115590794Krueppel-like factor 2. (416 aa)    
Predicted Functional Partners:
ENSSAUP00010046194
annotation not available
    
  0.844
ENSSAUP00010062713
Ribosomal protein S27a.
    
  0.645
ENSSAUP00010011379
Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1.
    
  0.606
ENSSAUP00010057349
Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).
    
  0.606
ENSSAUP00010046198
annotation not available
    
  0.588
rela
RELA proto-oncogene, NF-kB subunit.
    
 0.587
REL
REL proto-oncogene, NF-kB subunit.
    
 0.587
ENSSAUP00010032028
V-rel avian reticuloendotheliosis viral oncogene homolog B.
    
 0.587
LOC115587574
Thioredoxin domain-containing protein 3 homolog.
    
 0.578
bard1
BRCA1 associated RING domain 1.
    
  0.577
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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