STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zranb1Zinc finger RANBP2-type containing 1. (711 aa)    
Predicted Functional Partners:
ENSSAUP00010062713
Ribosomal protein S27a.
   
  0.906
ubxn7
UBX domain protein 7.
   
   0.874
ENSSAUP00010058412
TNF receptor-associated factor 6.
    
 0.872
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.854
tnip1
TNFAIP3 interacting protein 1.
    
 0.824
ripk4
Receptor interacting serine/threonine kinase 4.
   
 0.819
LOC115572968
ubiquitin-60S ribosomal protein L40-like.
    
  0.802
ENSSAUP00010019090
annotation not available
   
 0.789
ENSSAUP00010062031
Ubiquitin B.
   
 0.789
ENSSAUP00010013380
APC regulator of WNT signaling pathway 2.
    
  0.723
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.