STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccnhCyclin H. (319 aa)    
Predicted Functional Partners:
mnat1
MNAT1 component of CDK activating kinase.
   
 0.999
gtf2h3
General transcription factor IIH subunit 3.
   
 0.998
ercc2
ERCC excision repair 2, TFIIH core complex helicase subunit.
    
 0.996
gtf2e1
General transcription factor IIE subunit 1.
    
 0.996
gtf2h1
General transcription factor IIH subunit 1.
    
 0.995
gtf2e2
General transcription factor IIE subunit 2.
    
 0.995
ENSSAUP00010054946
Excision repair cross-complementation group 3.
    
 0.995
ENSSAUP00010023019
General transcription factor IIH, polypeptide 4.
    
 0.993
LOC115580974
General transcription factor IIH subunit 2-like.
   
 0.993
cdk7
Cyclin dependent kinase 7.
    
 0.992
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.