STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nup107Nucleoporin 107. (905 aa)    
Predicted Functional Partners:
nup133
Nucleoporin 133.
   
 0.999
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
   
 0.999
nup98
Nucleoporin 98.
   
 0.999
LOC115567159
Nucleoporin SEH1.
   
 0.999
ENSSAUP00010036005
Nucleoporin 37.
   
 0.999
LOC115588252
ranBP2-like and GRIP domain-containing protein 3.
   
 0.999
nup85
Nucleoporin 85.
   
 0.999
nup160
Nucleoporin 160.
   
 0.999
nup205
Nucleoporin 205.
   
 0.997
nup93
Nucleoporin 93.
   
 0.997
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.