STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRPPRCLeucine rich pentatricopeptide repeat containing. (1439 aa)    
Predicted Functional Partners:
slirp
SRA stem-loop interacting RNA binding protein.
   
 
 0.950
eprs1
glutamyl-prolyl-tRNA synthetase 1.
   
 
 0.786
ENSSAUP00010031156
G elongation factor, mitochondrial 1.
   
  
 0.715
ENSSAUP00010040335
Pentatricopeptide repeat domain 3.
   
  
 0.693
ENSSAUP00010027644
annotation not available
   
 
 0.627
LOC115578336
Cytochrome c iso-1/iso-2-like.
   
 
 0.627
LOC115588710
Cytochrome c-b-like.
   
 
 0.627
ENSSAUP00010056283
annotation not available
   
 
  0.615
hspa9
Heat shock protein family A (Hsp70) member 9.
   
 
 0.582
NCBP1
Nuclear cap binding protein subunit 1.
   
   0.555
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.