STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115575279Perforin-1-like. (614 aa)    
Predicted Functional Partners:
LOC115597422
Antimicrobial peptide NK-lysin-like.
   
  
 0.934
LOC115583354
T-cell surface glycoprotein CD8 alpha chain-like.
   
  
 0.914
LOC115576329
Interleukin-2 receptor subunit beta-like.
   
  
 0.865
LOC115590831
Tumor necrosis factor ligand superfamily member 6-like.
   
 0.835
LOC115585320
Perforin-1-like.
  
  
 
0.804
LOC115571435
Perforin-1-like.
  
  
 
0.803
LOC115575654
Perforin-1-like.
  
  
 
0.795
LOC115583286
Complement C1q subcomponent subunit C-like.
   
 0.706
ENSSAUP00010058706
annotation not available
    
 
 0.627
LOC115577269
T-cell surface antigen CD2-like.
   
 0.623
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.