STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdxHighly divergent homeobox. (796 aa)    
Predicted Functional Partners:
stx18
Syntaxin 18.
    
 0.894
rint1
RAD50 interactor 1.
    
 0.889
use1
Unconventional SNARE in the ER 1.
    
 0.881
nbas
NBAS subunit of NRZ tethering complex.
    
 0.849
ENSSAUP00010059483
Zw10 kinetochore protein.
    
 0.848
sec22c
SEC22 homolog C, vesicle trafficking protein.
   
 0.736
LOC115572361
Vesicle-trafficking protein SEC22b-like.
   
 0.736
LOC115591854
Vesicle-trafficking protein SEC22b-B.
   
 0.736
sec22a
SEC22 homolog A, vesicle trafficking protein.
   
 0.736
ENSSAUP00010001267
TSC complex subunit 2.
    
 0.682
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.