STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010060446Collagen, type XI, alpha 1b. (1481 aa)    
Predicted Functional Partners:
LOC115583286
Complement C1q subcomponent subunit C-like.
  
 
 
0.572
col6a2
Collagen type VI alpha 2 chain.
  
 
0.542
ENSSAUP00010062559
Collagen, type VI, alpha 1.
  
 
0.538
lig1
DNA ligase 1.
    
 0.518
COL22A1
Collagen type XXII alpha 1 chain.
  
 
0.514
ENSSAUP00010045830
Integrin, beta 4.
   
 0.510
ENSSAUP00010053420
Integrin, beta 6.
    
 0.510
itgb8
Integrin subunit beta 8.
    
  0.495
ENSSAUP00010056173
annotation not available
    
  0.482
ENSSAUP00010069114
annotation not available
   
  0.464
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.