STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abtb1Ankyrin repeat and BTB domain containing 1. (476 aa)    
Predicted Functional Partners:
vars1
valyl-tRNA synthetase 1.
   
 
 0.894
ENSSAUP00010047107
cysteinyl-tRNA synthetase 1.
   
   0.716
LOC115572257
Elongation factor 1-delta-like.
    
   0.714
LOC115591552
Elongation factor 1-delta-like.
    
   0.714
cacul1
CDK2 associated cullin domain 1.
   
 0.700
LOC115571389
Cullin-3.
   
 0.700
cul1
Cullin 1.
   
 0.700
CUL3
Cullin-3-like.
   
 0.700
mars1
methionyl-tRNA synthetase 1.
   
 0.679
eci2
enoyl-CoA delta isomerase 2.
    
 0.662
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.