STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115571262Ataxin-2-like protein. (1049 aa)    
Predicted Functional Partners:
lsm12
LSM12 homolog.
    
 0.983
LOC115597532
Ataxin-3-like.
    
 0.861
atxn2
Ataxin 2.
    
 
0.856
LOC115566657
Probable ATP-dependent RNA helicase ddx6.
    
 
 0.778
LOC115576278
Probable ATP-dependent RNA helicase ddx6.
    
 
 0.778
ENSSAUP00010069342
annotation not available
    
 
 0.778
spaca6
Sperm acrosome associated 6.
    
 
 0.777
ENSSAUP00010002988
Poly A binding protein, cytoplasmic 1 b.
   
 
 0.775
naa38
N(alpha)-acetyltransferase 38, NatC auxiliary subunit.
    
 
 0.775
LOC115567413
Polyadenylate-binding protein 1-like.
   
 
 0.775
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.