STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zdhhc6Zinc finger DHHC-type containing 6. (412 aa)    
Predicted Functional Partners:
zdhhc24
Zinc finger DHHC-type containing 24.
   
 
0.528
zdhhc4
Zinc finger DHHC-type containing 4.
      
0.524
selenok
Selenoprotein K.
      
 0.521
zdhhc22
Zinc finger DHHC-type containing 22.
   
 
 0.519
zdhhc21
Zinc finger DHHC-type containing 21.
   
 
0.518
LOC115565936
Vacuolar protein 8-like.
      
 0.512
tectb
Tectorin beta.
      
 0.509
ENSSAUP00010042928
annotation not available
      
 0.485
ccdc186
Coiled-coil domain containing 186.
      
 0.483
nhlrc2
NHL repeat containing 2.
      
 0.483
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.