STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ldlrLow density lipoprotein receptor. (902 aa)    
Predicted Functional Partners:
RELN
Reelin.
    
 0.936
pcsk9
Proprotein convertase subtilisin/kexin type 9.
    
 0.929
ENSSAUP00010037452
Low density lipoprotein receptor adaptor protein 1b.
    
 0.924
LOC115579474
Low density lipoprotein receptor adapter protein 1-B-like.
    
 0.881
dab2
DAB adaptor protein 2.
    
 0.871
mylip
Myosin regulatory light chain interacting protein.
    
 0.870
LOC115574041
Low density lipoprotein receptor adapter protein 1-like.
    
  0.853
ENSSAUP00010027505
Si:dkey-19b23.8.
    
  0.853
LOC115596278
Dickkopf-related protein 1-like.
    
 0.850
ENSSAUP00010025051
annotation not available
    
 0.846
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.