STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115574908Protein HID1-like. (800 aa)    
Predicted Functional Partners:
usp40
Ubiquitin specific peptidase 40.
    
 
 0.776
usp7
Ubiquitin specific peptidase 7.
    
 
 0.776
gle1
GLE1 RNA export mediator.
   
 
 0.724
nup155
Nucleoporin 155.
    
 
 0.715
NUP54
Nucleoporin 54.
    
 
 0.673
ENSSAUP00010024533
annotation not available
    
 
 0.664
ENSSAUP00010045339
Zgc:153681.
    
 
 0.643
rae1
Ribonucleic acid export 1.
    
 
 0.626
nup133
Nucleoporin 133.
   
 
 0.603
LOC115584558
Proliferation-associated protein 2G4-like.
    
   0.582
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.