STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrpcSmall nuclear ribonucleoprotein polypeptide C. (171 aa)    
Predicted Functional Partners:
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.998
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.997
LOC115594409
U11/U12 small nuclear ribonucleoprotein 35 kDa protein-like.
   
 0.997
ENSSAUP00010043211
Small nuclear ribonucleoprotein polypeptide F.
   
 0.997
snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.996
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.995
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.995
ENSSAUP00010011237
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.992
sf3b1
Splicing factor 3b subunit 1.
   
 0.991
sf3b4
Splicing factor 3b subunit 4.
   
 0.989
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.