STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps10Ribosomal protein S10. (173 aa)    
Predicted Functional Partners:
rpl9
Ribosomal protein L9.
   
 
 0.999
ENSSAUP00010000760
Ribosomal protein L35a.
   
 
 0.999
rplp0
Ribosomal protein lateral stalk subunit P0.
   
 
 0.999
LOC115577492
40S ribosomal protein S18.
   
 0.999
rps17
Ribosomal protein S17.
   
 0.999
RPS20
Ribosomal protein S20.
   
 0.999
ENSSAUP00010005541
annotation not available
   
 0.999
rps3a
Ribosomal protein S3A.
   
 0.999
rpl13a
Ribosomal protein L13a.
   
 0.999
rps28
Ribosomal protein S28.
   
 0.999
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.