STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmutRNA 5-methylaminomethyl-2-thiouridylate methyltransferase. (419 aa)    
Predicted Functional Partners:
gtpbp3
GTP binding protein 3, mitochondrial.
  
 0.953
mto1
Mitochondrial tRNA translation optimization 1.
  
 0.928
ergic3
ERGIC and golgi 3.
  
 0.877
ergic1
Endoplasmic reticulum-golgi intermediate compartment 1.
  
 0.877
ERGIC2
Endoplasmic reticulum-Golgi intermediate compartment protein 2-like.
  
 0.877
LOC115586756
Endoplasmic reticulum-Golgi intermediate compartment protein 2-like.
  
 0.877
rfk
Riboflavin kinase.
  
 
  0.862
ENSSAUP00010034039
Argininosuccinate lyase.
    
  0.832
acod1
Aconitate decarboxylase 1.
  
 
 0.820
ddo
D-aspartate oxidase.
  
 
 0.820
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.