ptprn protein (Sparus aurata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ptprn

Protein tyrosine phosphatase receptor type N. (964 aa)

Predicted Functional Partners:

ENSSAUP00010044780

0.608

LOC115566471

0.583

LOC115596220

0.583

lrit1

0.583

lrit3

0.583

tnr

0.579

gab2

0.579

ENSSAUP00010002177

0.577

ENSSAUP00010023303

0.577

LOC115592652

0.577

Your Current Organism:

Sparus aurata

NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSAUP00010002177	ENSSAUP00010023303	ENSSAUP00010002177	ENSSAUP00010023303	annotation not available	Tenascin C.	0.855
ENSSAUP00010002177	LOC115592652	ENSSAUP00010002177	ENSSAUP00010037966	annotation not available	Tenascin-like.	0.824
ENSSAUP00010002177	ptprn	ENSSAUP00010002177	ENSSAUP00010067672	annotation not available	Protein tyrosine phosphatase receptor type N.	0.577
ENSSAUP00010002177	tnr	ENSSAUP00010002177	ENSSAUP00010042001	annotation not available	Tenascin R.	0.791
ENSSAUP00010023303	ENSSAUP00010002177	ENSSAUP00010023303	ENSSAUP00010002177	Tenascin C.	annotation not available	0.855
ENSSAUP00010023303	LOC115592652	ENSSAUP00010023303	ENSSAUP00010037966	Tenascin C.	Tenascin-like.	0.780
ENSSAUP00010023303	ptprn	ENSSAUP00010023303	ENSSAUP00010067672	Tenascin C.	Protein tyrosine phosphatase receptor type N.	0.577
ENSSAUP00010023303	tnr	ENSSAUP00010023303	ENSSAUP00010042001	Tenascin C.	Tenascin R.	0.845
ENSSAUP00010044780	ptprn	ENSSAUP00010044780	ENSSAUP00010067672	Proprotein convertase subtilisin/kexin type 2.	Protein tyrosine phosphatase receptor type N.	0.608
LOC115566471	LOC115596220	ENSSAUP00010047242	ENSSAUP00010056242	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3.	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	0.589
LOC115566471	lrit1	ENSSAUP00010047242	ENSSAUP00010056960	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3.	Leucine rich repeat, Ig-like and transmembrane domains 1.	0.594
LOC115566471	lrit3	ENSSAUP00010047242	ENSSAUP00010061010	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3.	Leucine rich repeat, Ig-like and transmembrane domains 3.	0.590
LOC115566471	ptprn	ENSSAUP00010047242	ENSSAUP00010067672	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3.	Protein tyrosine phosphatase receptor type N.	0.583
LOC115592652	ENSSAUP00010002177	ENSSAUP00010037966	ENSSAUP00010002177	Tenascin-like.	annotation not available	0.824
LOC115592652	ENSSAUP00010023303	ENSSAUP00010037966	ENSSAUP00010023303	Tenascin-like.	Tenascin C.	0.780
LOC115592652	ptprn	ENSSAUP00010037966	ENSSAUP00010067672	Tenascin-like.	Protein tyrosine phosphatase receptor type N.	0.577
LOC115592652	tnr	ENSSAUP00010037966	ENSSAUP00010042001	Tenascin-like.	Tenascin R.	0.802
LOC115596220	LOC115566471	ENSSAUP00010056242	ENSSAUP00010047242	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3.	0.589
LOC115596220	lrit1	ENSSAUP00010056242	ENSSAUP00010056960	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	Leucine rich repeat, Ig-like and transmembrane domains 1.	0.470
LOC115596220	lrit3	ENSSAUP00010056242	ENSSAUP00010061010	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	Leucine rich repeat, Ig-like and transmembrane domains 3.	0.666