STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115577004Paraspeckle component 1-like. (526 aa)    
Predicted Functional Partners:
ENSSAUP00010067674
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.668
LOC115579104
Proto-oncogene tyrosine-protein kinase Yrk-like.
    
  0.562
ENSSAUP00010017365
FYN proto-oncogene, Src family tyrosine kinase a.
    
  0.562
LOC115574182
Tyrosine-protein kinase Fyn.
    
  0.562
LOC115585181
Tyrosine-protein kinase SRK3-like.
    
  0.562
LOC115585180
Protein-tyrosine kinase 6-like.
    
  0.562
ENSSAUP00010064304
Nudix hydrolase 21.
   
 
 0.546
LOC115589473
RNA-binding protein 4B-like.
   
 
0.527
ENSSAUP00010010034
Matrin 3-like 1.1.
   
 
 0.494
ENSSAUP00010030319
Small nuclear ribonucleoprotein polypeptide B2.
   
 
 0.463
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.