STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115574853Charged multivesicular body protein 6-like. (207 aa)    
Predicted Functional Partners:
ENSSAUP00010060633
Vacuolar protein sorting 25 homolog.
   
 0.982
snf8
SNF8 subunit of ESCRT-II.
    
 0.979
vps36
Vacuolar protein sorting 36 homolog.
 
  
 0.976
chmp2a
Charged multivesicular body protein 2A.
   
 0.969
chmp3
Charged multivesicular body protein 3.
    
 0.968
LOC115570478
Charged multivesicular body protein 4c-like.
    
 0.957
ENSSAUP00010056428
Vacuolar protein sorting 4 homolog A.
    
 0.944
LOC115590864
Vacuolar protein sorting-associated protein 4B-like.
    
 0.943
VPS4B
Vacuolar protein sorting 4 homolog B.
    
 0.943
LOC115583622
Charged multivesicular body protein 4c-like.
    
0.938
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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