STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115569753Copine-3-like. (548 aa)    
Predicted Functional Partners:
rnaseh2b
Ribonuclease H2 subunit B.
   
 
 0.704
rnaseh2a
Ribonuclease H2 subunit A.
   
 
 0.673
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.603
ENSSAUP00010040219
annotation not available
     
 0.568
capzb
Capping actin protein of muscle Z-line subunit beta.
     
 0.524
pi4kb
Phosphatidylinositol 4-kinase beta.
     
 0.501
LOC115577662
Phosphatidylinositol 4-kinase beta-like.
     
 0.501
pcsk9
Proprotein convertase subtilisin/kexin type 9.
     
 0.480
SACM1L
Phosphatidylinositide phosphatase SAC1-B.
     
 0.472
LOC115578907
Phosphatidylinositide phosphatase SAC1-A-like.
     
 0.472
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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