STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010069673Paired box 4. (397 aa)    
Predicted Functional Partners:
TIMM22
Translocase of inner mitochondrial membrane 22.
    
 0.853
timm10
Translocase of inner mitochondrial membrane 10.
   
 0.796
timm9
Translocase of inner mitochondrial membrane 9.
   
 
 0.787
sdhd
Succinate dehydrogenase complex subunit D.
    
 0.765
cactin
Cactin, spliceosome C complex subunit.
    
 0.761
pdx1
Pancreatic and duodenal homeobox 1.
   
0.602
LOC115565805
Transcriptional repressor protein YY1-like.
    
 0.599
YY1
Transcriptional repressor protein YY1-like.
    
 0.599
LOC115585417
CREB-binding protein-like.
    
 0.585
crebbp
CREB binding protein.
    
 0.585
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.