STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gtpbp4GTP binding protein 4. (729 aa)    
Predicted Functional Partners:
rsl24d1
Ribosomal L24 domain containing 1.
   
 
 0.999
gnl2
G protein nucleolar 2.
   
 
 0.999
nsa2
NSA2 ribosome biogenesis factor.
   
 
 0.999
ENSSAUP00010007246
Ribosome production factor 2 homolog.
   
 
 0.998
mrto4
MRT4 homolog, ribosome maturation factor.
   
 
 0.998
ddx18
DEAD-box helicase 18.
   
 
 0.998
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.998
brix1
Biogenesis of ribosomes BRX1.
   
 
 0.998
ENSSAUP00010059461
Pescadillo.
   
 
 0.998
noc2l
NOC2 like nucleolar associated transcriptional repressor.
   
 
 0.997
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.