STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010070004Cadherin 7a. (811 aa)    
Predicted Functional Partners:
ctnnb1
Catenin beta 1.
    
 0.837
LOC115586038
Junction plakoglobin-like.
    
 0.760
LOC115576063
Junction plakoglobin-like.
    
 0.760
CTNND1
Catenin delta-1-like.
    
 0.731
ENSSAUP00010065970
Catenin (cadherin-associated protein), delta 1.
    
 0.731
ARVCF
ARVCF delta catenin family member.
    
 0.730
LOC115575352
Catenin beta-1-like.
    
 0.717
fjx1
Four-jointed box kinase 1.
   
 0.700
ctnna1
Catenin alpha 1.
    
 0.689
ctnna2
Catenin alpha 2.
    
 0.689
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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