STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN29454.1Hypothetical protein; Belongs to the UPF0346 family. (74 aa)    
Predicted Functional Partners:
KRN29452.1
Lysophospholipase L1 related esterase.
 
  
 0.927
KRN29453.1
Extracellular protein precursor.
 
   
 0.915
KRN29446.1
Tetratricopeptide repeat family protein.
 
     0.765
KRN29705.1
Hypothetical protein.
  
     0.732
KRN29315.1
Hypothetical protein.
  
     0.727
KRN29455.1
Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
       0.713
rnhB
Ribonuclease HII family protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.713
KRN29457.1
Dna processing protein.
       0.713
KRN29644.1
Thiamine diphosphokinase.
  
     0.611
KRN29433.1
Hypothetical protein.
  
     0.584
Your Current Organism:
Lactobacillus selangorensis
NCBI taxonomy Id: 81857
Other names: ATCC BAA-66, CCUG 43347, CIP 106482, DSM 13344, L. selangorensis, LMG 17710, LMG:17710, Lactobacillus selangorensis (Leisner et al. 2000) Haakensen et al. 2011, Lactobacillus sp. LMG17710, Paralactobacillus selangorensis, Paralactobacillus selangorensis Leisner et al. 2000, bacterium LMG17714
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