Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRN29739.1 | KRN29740.1 | IV38_GL000627 | IV38_GL000628 | dnaI protein. | dnaB protein. | 0.952 |
KRN29739.1 | coaE | IV38_GL000627 | IV38_GL000630 | dnaI protein. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.641 |
KRN29739.1 | murC | IV38_GL000627 | IV38_GL000634 | dnaI protein. | Udp-n-acetylmuramate--l-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.410 |
KRN29739.1 | mutM | IV38_GL000627 | IV38_GL000631 | dnaI protein. | Fpg protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.704 |
KRN29739.1 | nrdR | IV38_GL000627 | IV38_GL000629 | dnaI protein. | Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.802 |
KRN29739.1 | polA | IV38_GL000627 | IV38_GL000632 | dnaI protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.678 |
KRN29739.1 | thrS | IV38_GL000627 | IV38_GL000626 | dnaI protein. | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.542 |
KRN29740.1 | KRN29739.1 | IV38_GL000628 | IV38_GL000627 | dnaB protein. | dnaI protein. | 0.952 |
KRN29740.1 | coaE | IV38_GL000628 | IV38_GL000630 | dnaB protein. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.626 |
KRN29740.1 | murC | IV38_GL000628 | IV38_GL000634 | dnaB protein. | Udp-n-acetylmuramate--l-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.409 |
KRN29740.1 | mutM | IV38_GL000628 | IV38_GL000631 | dnaB protein. | Fpg protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.721 |
KRN29740.1 | nrdR | IV38_GL000628 | IV38_GL000629 | dnaB protein. | Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.906 |
KRN29740.1 | polA | IV38_GL000628 | IV38_GL000632 | dnaB protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.611 |
KRN29740.1 | thrS | IV38_GL000628 | IV38_GL000626 | dnaB protein. | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.514 |
cmk | nrdR | IV38_GL000326 | IV38_GL000629 | Cytidylate kinase. | Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.732 |
cmk | polA | IV38_GL000326 | IV38_GL000632 | Cytidylate kinase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.400 |
cmk | thrS | IV38_GL000326 | IV38_GL000626 | Cytidylate kinase. | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.572 |
coaE | KRN29739.1 | IV38_GL000630 | IV38_GL000627 | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | dnaI protein. | 0.641 |
coaE | KRN29740.1 | IV38_GL000630 | IV38_GL000628 | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | dnaB protein. | 0.626 |
coaE | murC | IV38_GL000630 | IV38_GL000634 | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Udp-n-acetylmuramate--l-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.483 |
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