STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN27233.1Di- tripeptide transporter. (489 aa)    
Predicted Functional Partners:
KRN27232.1
Phosphohydrolase.
       0.792
KRN29183.1
Hypothetical protein.
   
  
 0.599
lacD
Tagatose 1,6-diphosphate aldolase; Belongs to the aldolase LacD family.
   
    0.583
KRN29019.1
Alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.
  
    0.571
KRN27980.1
Rrf2-linked nadh-flavin reductase.
   
    0.571
KRN27471.1
Extracellular protein precursor.
   
    0.564
KRN29405.1
Hypothetical protein.
   
  
 0.563
KRN27473.1
xaa-Pro dipeptidase.
 
   
 0.498
KRN27479.1
Dipeptidase PepV.
      
 0.495
KRN29690.1
xaa-Pro dipeptidyl-peptidase; Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline.
     
 0.494
Your Current Organism:
Lactobacillus selangorensis
NCBI taxonomy Id: 81857
Other names: ATCC BAA-66, CCUG 43347, CIP 106482, DSM 13344, L. selangorensis, LMG 17710, LMG:17710, Lactobacillus selangorensis (Leisner et al. 2000) Haakensen et al. 2011, Lactobacillus sp. LMG17710, Paralactobacillus selangorensis, Paralactobacillus selangorensis Leisner et al. 2000, bacterium LMG17714
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