STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN28949.1UspA family nucleotide-binding protein. (148 aa)    
Predicted Functional Partners:
KRN28948.1
Hypothetical protein.
       0.578
KRN27482.1
Hypothetical protein.
  
     0.574
KRN29022.1
Hypothetical protein.
  
    0.572
KRN28950.1
Hypothetical protein.
  
    0.482
KRN28402.1
Hypothetical protein; Belongs to the UPF0374 family.
  
     0.481
KRN27919.1
Hypothetical protein.
  
     0.445
KRN28951.1
Ubiquinone biosynthesis protein UbiB.
     
 0.429
KRN27269.1
Lipoprotein precursor.
  
    0.420
KRN29486.1
Hypothetical protein.
  
  
 0.418
KRN29441.1
lysM domain protein.
  
     0.407
Your Current Organism:
Lactobacillus selangorensis
NCBI taxonomy Id: 81857
Other names: ATCC BAA-66, CCUG 43347, CIP 106482, DSM 13344, L. selangorensis, LMG 17710, LMG:17710, Lactobacillus selangorensis (Leisner et al. 2000) Haakensen et al. 2011, Lactobacillus sp. LMG17710, Paralactobacillus selangorensis, Paralactobacillus selangorensis Leisner et al. 2000, bacterium LMG17714
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.