STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN28187.1Amino acid ABC transporter substrate-binding protein. (279 aa)    
Predicted Functional Partners:
KRN28189.1
Glutamine transporter permease.
 0.999
KRN28188.1
Glutamine ABC superfamily ATP binding cassette transporter, permease protein.
 0.998
KRN28186.1
ABC-type polar amino acid transport system, ATPase component.
 0.991
KRN27927.1
Phosphonate-transporting ATPase.
 0.954
KRN28931.1
ABC-type polar amino acid transport system, ATPase component.
 0.947
KRN27916.1
Hypothetical protein.
    
 0.895
KRN28739.1
Amino acid ABC transporter ATP-binding protein.
 0.876
KRN29351.1
Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.
 0.807
KRN29352.1
ABC transporter, ATP-binding protein.
 0.801
KRN28738.1
Amino acid ABC transporter permease.
 0.773
Your Current Organism:
Lactobacillus selangorensis
NCBI taxonomy Id: 81857
Other names: ATCC BAA-66, CCUG 43347, CIP 106482, DSM 13344, L. selangorensis, LMG 17710, LMG:17710, Lactobacillus selangorensis (Leisner et al. 2000) Haakensen et al. 2011, Lactobacillus sp. LMG17710, Paralactobacillus selangorensis, Paralactobacillus selangorensis Leisner et al. 2000, bacterium LMG17714
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