STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN27751.1Hypothetical protein. (551 aa)    
Predicted Functional Partners:
KRN27750.1
Hypothetical protein.
 
   
 0.950
KRN27749.1
Hypothetical protein.
 
     0.887
KRN27746.1
Hypothetical protein.
 
     0.835
KRN27741.1
Phage portal protein, HK97 family.
 
    0.816
KRN27745.1
Hypothetical protein.
 
     0.814
KRN27740.1
Terminase large subunit.
 
     0.802
KRN27739.1
Hypothetical protein.
 
     0.786
KRN27743.1
Phage major head protein.
 
     0.782
KRN27742.1
Hypothetical protein; Belongs to the peptidase S14 family.
 
    0.646
KRN27729.1
Hypothetical protein.
  
     0.526
Your Current Organism:
Lactobacillus selangorensis
NCBI taxonomy Id: 81857
Other names: ATCC BAA-66, CCUG 43347, CIP 106482, DSM 13344, L. selangorensis, LMG 17710, LMG:17710, Lactobacillus selangorensis (Leisner et al. 2000) Haakensen et al. 2011, Lactobacillus sp. LMG17710, Paralactobacillus selangorensis, Paralactobacillus selangorensis Leisner et al. 2000, bacterium LMG17714
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