STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN27539.1Hypothetical protein. (665 aa)    
Predicted Functional Partners:
KRN27538.1
Tagatose-6-phosphate ketose aldose isomerase.
 
     0.937
KRN27542.1
PTS system, mannose-specific IIC component.
 
     0.886
KRN27541.1
Hypothetical protein.
 
     0.838
KRN27540.1
PTS family mannose fructose sorbose porter component IIA.
       0.728
KRN28973.1
Transcriptional regulator.
  
     0.646
lacD
Tagatose 1,6-diphosphate aldolase; Belongs to the aldolase LacD family.
 
     0.632
KRN27543.1
PTS family mannose fructose sorbose porter component IIB.
 
     0.602
KRN27537.1
Hypothetical protein.
       0.479
Your Current Organism:
Lactobacillus selangorensis
NCBI taxonomy Id: 81857
Other names: ATCC BAA-66, CCUG 43347, CIP 106482, DSM 13344, L. selangorensis, LMG 17710, LMG:17710, Lactobacillus selangorensis (Leisner et al. 2000) Haakensen et al. 2011, Lactobacillus sp. LMG17710, Paralactobacillus selangorensis, Paralactobacillus selangorensis Leisner et al. 2000, bacterium LMG17714
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.