STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN27367.1Hypothetical protein. (94 aa)    
Predicted Functional Partners:
KRN28953.1
ATP-dependent helicase deoxyribonuclease subunit B; ATP-dependent DNA helicase.
  
 
 0.940
KRN27366.1
Hypothetical protein.
     0.923
KRN27365.1
Hypothetical protein.
 
  
 0.862
recD2
recD protein; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
  
 
 0.828
KRN27357.1
Phage-related antirepressor.
 
     0.747
KRN27355.1
Prophage Lp1 protein 7.
 
     0.744
KRN27166.1
Phage transcriptional regulator, ArpU family.
  
     0.719
KRN29204.1
Integrase family protein; Belongs to the 'phage' integrase family.
 
  
 0.637
KRN27163.1
Hypothetical protein.
  
     0.601
KRN27750.1
Hypothetical protein.
  
     0.579
Your Current Organism:
Lactobacillus selangorensis
NCBI taxonomy Id: 81857
Other names: ATCC BAA-66, CCUG 43347, CIP 106482, DSM 13344, L. selangorensis, LMG 17710, LMG:17710, Lactobacillus selangorensis (Leisner et al. 2000) Haakensen et al. 2011, Lactobacillus sp. LMG17710, Paralactobacillus selangorensis, Paralactobacillus selangorensis Leisner et al. 2000, bacterium LMG17714
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