STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORA65333.14-coumarate--CoA ligase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)    
Predicted Functional Partners:
ORA69263.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.856
ORA67800.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.856
ORA65079.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.856
ORA67010.1
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.790
ORA64928.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.788
ORA64255.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.775
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.739
ORA65334.1
Phosphoribosylglycinamide formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.662
rplO
50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.607
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
    
   0.607
Your Current Organism:
Mycolicibacterium elephantis
NCBI taxonomy Id: 81858
Other names: CIP 106831, DSM 44368, JCM 12406, M. elephantis, Mycobacterium elephantis, Mycobacterium elephantis Shojaei et al. 2000, Mycobacterium sp. 1477680.9, Mycobacterium sp. 852002-10318_SCH4845932, Mycobacterium sp. 852014-51730_SCH5271717, Mycolicibacterium elephantis (Shojaei et al. 2000) Gupta et al. 2018, strain 484
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.